Variant Details

Variant: essv4934741

Internal ID

7520373

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr3:179901212..179901303	hg38	UCSC Ensembl
Outer	chr3:179901074..179901449	hg38	UCSC Ensembl
Inner	chr3:179619000..179619091	hg19	UCSC Ensembl
Outer	chr3:179618862..179619237	hg19	UCSC Ensembl
Inner	chr3:181101694..181101785	hg18	UCSC Ensembl
Outer	chr3:181101556..181101931	hg18	UCSC Ensembl

Cytoband

3q26.33

Allele length

Assembly	Allele length
hg38	376
hg19	376
hg18	376

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv1977016

Supporting Variants

Samples

NA18507

Known Genes

PEX5L

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4934741

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a