Variant Details

Variant: essv4924329

Internal ID

7509961

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr7:7502700..7502979	hg38	UCSC Ensembl
Outer	chr7:7502495..7503181	hg38	UCSC Ensembl
Inner	chr7:7542331..7542610	hg19	UCSC Ensembl
Outer	chr7:7542126..7542812	hg19	UCSC Ensembl
Inner	chr7:7508856..7509135	hg18	UCSC Ensembl
Outer	chr7:7508651..7509337	hg18	UCSC Ensembl

Cytoband

7p21.3

Allele length

Assembly	Allele length
hg38	687
hg19	687
hg18	687

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2413938

Supporting Variants

Samples

NA18507

Known Genes

COL28A1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4924329

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a