Variant Details

Variant: essv4915792

Internal ID

7154738

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr19:7688904..7688979	hg38	UCSC Ensembl
Outer	chr19:7688748..7689152	hg38	UCSC Ensembl
Inner	chr19:7753790..7753865	hg19	UCSC Ensembl
Outer	chr19:7753634..7754038	hg19	UCSC Ensembl
Inner	chr19:7659790..7659865	hg18	UCSC Ensembl
Outer	chr19:7659634..7660038	hg18	UCSC Ensembl

Cytoband

19p13.2

Allele length

Assembly	Allele length
hg38	405
hg19	405
hg18	405

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2405737

Supporting Variants

Samples

NA18507

Known Genes

FCER2

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4915792

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a