Variant Details

Variant: essv4915317

Internal ID

7154263

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr17:60368991..60369296	hg38	UCSC Ensembl
Outer	chr17:60368802..60369482	hg38	UCSC Ensembl
Inner	chr17:58446352..58446657	hg19	UCSC Ensembl
Outer	chr17:58446163..58446843	hg19	UCSC Ensembl
Inner	chr17:55801134..55801439	hg18	UCSC Ensembl
Outer	chr17:55800945..55801625	hg18	UCSC Ensembl

Cytoband

17q23.2

Allele length

Assembly	Allele length
hg38	681
hg19	681
hg18	681

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2085161

Supporting Variants

Samples

NA18507

Known Genes

USP32

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4915317

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a