Variant Details

Variant: essv4907912

Internal ID

7146858

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr2:199447731..199447956	hg38	UCSC Ensembl
Outer	chr2:199447544..199448136	hg38	UCSC Ensembl
Inner	chr2:200312454..200312679	hg19	UCSC Ensembl
Outer	chr2:200312267..200312859	hg19	UCSC Ensembl
Inner	chr2:200020699..200020924	hg18	UCSC Ensembl
Outer	chr2:200020512..200021104	hg18	UCSC Ensembl

Cytoband

2q33.1

Allele length

Assembly	Allele length
hg38	593
hg19	593
hg18	593

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2110977

Supporting Variants

Samples

NA18507

Known Genes

SATB2

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4907912

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a