Variant Details

Variant: essv4906780

Internal ID

7492412

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr13:35761504..35762605	hg38	UCSC Ensembl
Outer	chr13:35761381..35762735	hg38	UCSC Ensembl
Inner	chr13:36335641..36336742	hg19	UCSC Ensembl
Outer	chr13:36335518..36336872	hg19	UCSC Ensembl
Inner	chr13:35233641..35234742	hg18	UCSC Ensembl
Outer	chr13:35233518..35234872	hg18	UCSC Ensembl

Cytoband

13q13.3

Allele length

Assembly	Allele length
hg38	1355
hg19	1355
hg18	1355

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2021136

Supporting Variants

Samples

NA18507

Known Genes

MIR548F5

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4906780

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a