Variant Details

Variant: essv4903480

Internal ID

7142426

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr2:181491260..181491557	hg38	UCSC Ensembl
Outer	chr2:181491048..181491767	hg38	UCSC Ensembl
Inner	chr2:182355987..182356284	hg19	UCSC Ensembl
Outer	chr2:182355775..182356494	hg19	UCSC Ensembl
Inner	chr2:182064232..182064529	hg18	UCSC Ensembl
Outer	chr2:182064020..182064739	hg18	UCSC Ensembl

Cytoband

2q31.3

Allele length

Assembly	Allele length
hg38	720
hg19	720
hg18	720

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv1979132

Supporting Variants

Samples

NA18507

Known Genes

ITGA4

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4903480

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a