Variant Details

Variant: essv4883654

Internal ID

7469286

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr6:146716310..146716620	hg38	UCSC Ensembl
Outer	chr6:146716103..146716835	hg38	UCSC Ensembl
Inner	chr6:147037446..147037756	hg19	UCSC Ensembl
Outer	chr6:147037239..147037971	hg19	UCSC Ensembl
Inner	chr6:147079139..147079449	hg18	UCSC Ensembl
Outer	chr6:147078932..147079664	hg18	UCSC Ensembl

Cytoband

6q24.3

Allele length

Assembly	Allele length
hg38	733
hg19	733
hg18	733

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2045633

Supporting Variants

Samples

NA18507

Known Genes

ADGB

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4883654

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a