Variant Details

Variant: essv4877255

Internal ID

7116201

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr8:72023193..72023216	hg38	UCSC Ensembl
Outer	chr8:72022997..72023437	hg38	UCSC Ensembl
Inner	chr8:72935428..72935451	hg19	UCSC Ensembl
Outer	chr8:72935232..72935672	hg19	UCSC Ensembl
Inner	chr8:73097982..73098005	hg18	UCSC Ensembl
Outer	chr8:73097786..73098226	hg18	UCSC Ensembl

Cytoband

8q13.3

Allele length

Assembly	Allele length
hg38	441
hg19	441
hg18	441

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv1942504

Supporting Variants

Samples

NA18507

Known Genes

LOC100132891, TRPA1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4877255

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a