Variant Details

Variant: essv4840059

Internal ID

7425691

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:172551672..172551788	hg38	UCSC Ensembl
Outer	chr5:172551538..172551897	hg38	UCSC Ensembl
Inner	chr5:171978675..171978791	hg19	UCSC Ensembl
Outer	chr5:171978541..171978900	hg19	UCSC Ensembl
Inner	chr5:171911280..171911396	hg18	UCSC Ensembl
Outer	chr5:171911146..171911505	hg18	UCSC Ensembl

Cytoband

5q35.1

Allele length

Assembly	Allele length
hg38	360
hg19	360
hg18	360

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2258950

Supporting Variants

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4840059

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a