A curated catalogue of human genomic structural variation




Variant Details

Variant: essv48326



Internal ID11323144
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:28598357..28615658hg38UCSC Ensembl
Innerchr16:28609678..28626979hg19UCSC Ensembl
Innerchr16:28517179..28534480hg18UCSC Ensembl
Cytoband16p11.2
Allele length
AssemblyAllele length
hg3817302
hg1917302
hg1817302
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv19040
Supporting Variants
SamplesNA07037
Known GenesSULT1A1
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv48326
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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