Variant Details

Variant: essv4831624

Internal ID

7417256

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:15906442..15912552	hg38	UCSC Ensembl
Outer	chr5:15906246..15912767	hg38	UCSC Ensembl
Inner	chr5:15906551..15912661	hg19	UCSC Ensembl
Outer	chr5:15906355..15912876	hg19	UCSC Ensembl
Inner	chr5:15959551..15965661	hg18	UCSC Ensembl
Outer	chr5:15959355..15965876	hg18	UCSC Ensembl

Cytoband

5p15.1

Allele length

Assembly	Allele length
hg38	6522
hg19	6522
hg18	6522

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2021602

Supporting Variants

Samples

NA18507

Known Genes

FBXL7

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4831624

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a