Variant Details

Variant: essv4828988

Internal ID

7067934

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:71046076..71046300	hg38	UCSC Ensembl
Inner	chrX:45587576..45587863	hg19	UCSC Ensembl
Outer	chrX:45587353..45588058	hg19	UCSC Ensembl
Inner	chrX:45472520..45472807	hg18	UCSC Ensembl
Outer	chrX:45472297..45473002	hg18	UCSC Ensembl

Cytoband

Xp11.3

Allele length

Assembly	Allele length
hg38	225
hg19	706
hg18	706

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2138101

Supporting Variants

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4828988

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a