Variant Details

Variant: essv4821302

Internal ID

7406934

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:107557251..107557393	hg38	UCSC Ensembl
Outer	chr5:107557119..107557522	hg38	UCSC Ensembl
Inner	chr5:106892952..106893094	hg19	UCSC Ensembl
Outer	chr5:106892820..106893223	hg19	UCSC Ensembl
Inner	chr5:106920851..106920993	hg18	UCSC Ensembl
Outer	chr5:106920719..106921122	hg18	UCSC Ensembl

Cytoband

5q21.3

Allele length

Assembly	Allele length
hg38	404
hg19	404
hg18	404

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2036103

Supporting Variants

Samples

NA18507

Known Genes

EFNA5

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4821302

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a