A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4818732



Internal ID7404364
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:45038626..45038729hg38UCSC Ensembl
Outerchr12:45038463..45038905hg38UCSC Ensembl
Innerchr12:45432409..45432512hg19UCSC Ensembl
Outerchr12:45432246..45432688hg19UCSC Ensembl
Innerchr12:43718676..43718779hg18UCSC Ensembl
Outerchr12:43718513..43718955hg18UCSC Ensembl
Cytoband12q12
Allele length
AssemblyAllele length
hg38443
hg19443
hg18443
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2404363
Supporting Variants
SamplesNA18507
Known GenesDBX2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4818732
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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