A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4818339



Internal ID7403971
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:110497747..110498008hg38UCSC Ensembl
Outerchr13:110497650..110498084hg38UCSC Ensembl
Innerchr13:111150094..111150355hg19UCSC Ensembl
Outerchr13:111149997..111150431hg19UCSC Ensembl
Innerchr13:109948095..109948356hg18UCSC Ensembl
Outerchr13:109947998..109948432hg18UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38435
hg19435
hg18435
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2369594
Supporting Variants
SamplesNA18507
Known GenesCOL4A2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4818339
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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