A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4775353



Internal ID7360985
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:110483702..110483731hg38UCSC Ensembl
Outerchr13:110483503..110483944hg38UCSC Ensembl
Innerchr13:111136049..111136078hg19UCSC Ensembl
Outerchr13:111135850..111136291hg19UCSC Ensembl
Innerchr13:109934050..109934079hg18UCSC Ensembl
Outerchr13:109933851..109934292hg18UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38442
hg19442
hg18442
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2279017
Supporting Variants
SamplesNA18507
Known GenesCOL4A2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4775353
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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