Variant Details

Variant: essv4735010

Internal ID

7320642

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:174180107..174180422	hg38	UCSC Ensembl
Outer	chr5:174179920..174180622	hg38	UCSC Ensembl
Inner	chr5:173607110..173607425	hg19	UCSC Ensembl
Outer	chr5:173606923..173607625	hg19	UCSC Ensembl
Inner	chr5:173539716..173540031	hg18	UCSC Ensembl
Outer	chr5:173539529..173540231	hg18	UCSC Ensembl

Cytoband

5q35.2

Allele length

Assembly	Allele length
hg38	703
hg19	703
hg18	703

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2103437

Supporting Variants

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4735010

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a