A curated catalogue of human genomic structural variation




Variant Details

Variant: essv47342



Internal ID11008349
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:13240589..13347768hg38UCSC Ensembl
Innerchr1:13346211..13453290hg19UCSC Ensembl
Innerchr1:13218798..13325877hg18UCSC Ensembl
Cytoband1p36.21
Allele length
AssemblyAllele length
hg38107180
hg19107080
hg18107080
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv20457
Supporting Variants
SamplesNA18861
Known GenesPRAMEF13, PRAMEF15, PRAMEF23, PRAMEF5, PRAMEF6, PRAMEF7, PRAMEF8, PRAMEF9
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv47342
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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