Variant Details

Variant: essv4724128

Internal ID

7309760

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:67542287..67543169	hg38	UCSC Ensembl
Outer	chr1:67542110..67543334	hg38	UCSC Ensembl
Inner	chr1:68007970..68008852	hg19	UCSC Ensembl
Outer	chr1:68007793..68009017	hg19	UCSC Ensembl
Inner	chr1:67780558..67781440	hg18	UCSC Ensembl
Outer	chr1:67780381..67781605	hg18	UCSC Ensembl

Cytoband

1p31.3

Allele length

Assembly	Allele length
hg38	1225
hg19	1225
hg18	1225

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2238529

Supporting Variants

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4724128

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a