Variant Details

Variant: essv4697157

Internal ID

6936103

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr16:83254964..83254993	hg38	UCSC Ensembl
Outer	chr16:83254757..83255204	hg38	UCSC Ensembl
Inner	chr16:83288569..83288598	hg19	UCSC Ensembl
Outer	chr16:83288362..83288809	hg19	UCSC Ensembl
Inner	chr16:81846070..81846099	hg18	UCSC Ensembl
Outer	chr16:81845863..81846310	hg18	UCSC Ensembl

Cytoband

16q23.3

Allele length

Assembly	Allele length
hg38	448
hg19	448
hg18	448

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2286188

Supporting Variants

Samples

NA18507

Known Genes

CDH13

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4697157

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a