A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4692434



Internal ID7278066
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:72941690..72941732hg38UCSC Ensembl
Outerchr6:72941496..72941943hg38UCSC Ensembl
Innerchr6:73651413..73651455hg19UCSC Ensembl
Outerchr6:73651219..73651666hg19UCSC Ensembl
Innerchr6:73708134..73708176hg18UCSC Ensembl
Outerchr6:73707940..73708387hg18UCSC Ensembl
Cytoband6q13
Allele length
AssemblyAllele length
hg38448
hg19448
hg18448
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2179651
Supporting Variants
SamplesNA18507
Known GenesKCNQ5
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4692434
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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