Variant Details

Variant: essv4686079

Internal ID

7271711

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr3:18714344..18714636	hg38	UCSC Ensembl
Outer	chr3:18714136..18714851	hg38	UCSC Ensembl
Inner	chr3:18755836..18756128	hg19	UCSC Ensembl
Outer	chr3:18755628..18756343	hg19	UCSC Ensembl
Inner	chr3:18730840..18731132	hg18	UCSC Ensembl
Outer	chr3:18730632..18731347	hg18	UCSC Ensembl

Cytoband

3p24.3

Allele length

Assembly	Allele length
hg38	716
hg19	716
hg18	716

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2159419

Supporting Variants

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4686079

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a