Variant Details

Variant: essv4644291

Internal ID

7229923

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr15:47428440..47428611	hg38	UCSC Ensembl
Outer	chr15:47428248..47428799	hg38	UCSC Ensembl
Inner	chr15:47720637..47720808	hg19	UCSC Ensembl
Outer	chr15:47720445..47720996	hg19	UCSC Ensembl
Inner	chr15:45507929..45508100	hg18	UCSC Ensembl
Outer	chr15:45507737..45508288	hg18	UCSC Ensembl

Cytoband

15q21.1

Allele length

Assembly	Allele length
hg38	552
hg19	552
hg18	552

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2032789

Supporting Variants

Samples

NA18507

Known Genes

SEMA6D

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4644291

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a