Variant Details

Variant: essv4630390

Internal ID

7216022

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr2:1702957..1703400	hg38	UCSC Ensembl
Outer	chr2:1702786..1703679	hg38	UCSC Ensembl
Inner	chr2:1706729..1707172	hg19	UCSC Ensembl
Outer	chr2:1706558..1707451	hg19	UCSC Ensembl
Inner	chr2:1685736..1686179	hg18	UCSC Ensembl
Outer	chr2:1685565..1686458	hg18	UCSC Ensembl

Cytoband

2p25.3

Allele length

Assembly	Allele length
hg38	894
hg19	894
hg18	894

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2045423

Supporting Variants

Samples

NA18507

Known Genes

PXDN

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4630390

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a