Variant Details

Variant: essv4603005

Internal ID

7188637

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr12:132499279..132499387	hg38	UCSC Ensembl
Outer	chr12:132499140..132499543	hg38	UCSC Ensembl
Inner	chr12:133075865..133075973	hg19	UCSC Ensembl
Outer	chr12:133075726..133076129	hg19	UCSC Ensembl
Inner	chr12:131585938..131586046	hg18	UCSC Ensembl
Outer	chr12:131585799..131586202	hg18	UCSC Ensembl

Cytoband

12q24.33

Allele length

Assembly	Allele length
hg38	404
hg19	404
hg18	404

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2407620

Supporting Variants

Samples

NA18507

Known Genes

FBRSL1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4603005

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a