Variant Details

Variant: essv4589623

Internal ID

6828569

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr21:44530444..44530513	hg38	UCSC Ensembl
Outer	chr21:44530276..44530695	hg38	UCSC Ensembl
Inner	chr21:45950327..45950396	hg19	UCSC Ensembl
Outer	chr21:45950159..45950578	hg19	UCSC Ensembl
Inner	chr21:44774755..44774824	hg18	UCSC Ensembl
Outer	chr21:44774587..44775006	hg18	UCSC Ensembl

Cytoband

21q22.3

Allele length

Assembly	Allele length
hg38	420
hg19	420
hg18	420

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2109234

Supporting Variants

Samples

NA18507

Known Genes

TSPEAR

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4589623

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a