Variant Details

Variant: essv4587601

Internal ID

7173233

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:101499670..101500095	hg38	UCSC Ensembl
Outer	chr11:101499626..101500157	hg38	UCSC Ensembl
Inner	chr11:101370401..101370826	hg19	UCSC Ensembl
Outer	chr11:101370357..101370888	hg19	UCSC Ensembl
Inner	chr11:100875611..100876036	hg18	UCSC Ensembl
Outer	chr11:100875567..100876098	hg18	UCSC Ensembl

Cytoband

11q22.1

Allele length

Assembly	Allele length
hg38	532
hg19	532
hg18	532

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2104024

Supporting Variants

Samples

NA18507

Known Genes

TRPC6

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4587601

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a