Variant Details

Variant: essv4583005

Internal ID

6821951

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr4:8300745..8300934	hg38	UCSC Ensembl
Outer	chr4:8300688..8301008	hg38	UCSC Ensembl
Inner	chr4:8302472..8302661	hg19	UCSC Ensembl
Outer	chr4:8302415..8302735	hg19	UCSC Ensembl
Inner	chr4:8353372..8353561	hg18	UCSC Ensembl
Outer	chr4:8353315..8353635	hg18	UCSC Ensembl

Cytoband

4p16.1

Allele length

Assembly	Allele length
hg38	321
hg19	321
hg18	321

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv1923424

Supporting Variants

Samples

NA18507

Known Genes

HTRA3

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4583005

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a