Variant Details

Variant: essv4557177

Internal ID

6796123

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:344947..345227	hg38	UCSC Ensembl
Outer	chr5:344871..345278	hg38	UCSC Ensembl
Inner	chr5:345062..345342	hg19	UCSC Ensembl
Outer	chr5:344986..345393	hg19	UCSC Ensembl
Inner	chr5:398062..398342	hg18	UCSC Ensembl
Outer	chr5:397986..398393	hg18	UCSC Ensembl

Cytoband

5p15.33

Allele length

Assembly	Allele length
hg38	408
hg19	408
hg18	408

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv1997829

Supporting Variants

Samples

NA18507

Known Genes

AHRR

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4557177

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a