Variant Details

Variant: essv4551458

Internal ID

6790404

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr13:49498404..49498456	hg38	UCSC Ensembl
Outer	chr13:49498188..49498654	hg38	UCSC Ensembl
Inner	chr13:50072540..50072592	hg19	UCSC Ensembl
Outer	chr13:50072324..50072790	hg19	UCSC Ensembl
Inner	chr13:48970541..48970593	hg18	UCSC Ensembl
Outer	chr13:48970325..48970791	hg18	UCSC Ensembl

Cytoband

13q14.2

Allele length

Assembly	Allele length
hg38	467
hg19	467
hg18	467

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2319655

Supporting Variants

Samples

NA18507

Known Genes

PHF11

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4551458

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a