A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4531033



Internal ID7116665
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr13:110408897..110409045hg38UCSC Ensembl
Outerchr13:110408722..110409217hg38UCSC Ensembl
Innerchr13:111061244..111061392hg19UCSC Ensembl
Outerchr13:111061069..111061564hg19UCSC Ensembl
Innerchr13:109859245..109859393hg18UCSC Ensembl
Outerchr13:109859070..109859565hg18UCSC Ensembl
Cytoband13q34
Allele length
AssemblyAllele length
hg38496
hg19496
hg18496
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2073023
Supporting Variants
SamplesNA18507
Known GenesCOL4A2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4531033
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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