A curated catalogue of human genomic structural variation




Variant Details

Variant: essv45290



Internal ID11018355
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:141688603..141700362hg38UCSC Ensembl
InnerchrX:140776764..140788518hg19UCSC Ensembl
InnerchrX:140604430..140616184hg18UCSC Ensembl
CytobandXq27.2
Allele length
AssemblyAllele length
hg3811760
hg1911755
hg1811755
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv16421
Supporting Variants
SamplesNA19129
Known GenesSPANXD, SPANXE
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv45290
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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