A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4521785



Internal ID7107417
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:39613108..39613419hg38UCSC Ensembl
Outerchr12:39612911..39613613hg38UCSC Ensembl
Innerchr12:40006910..40007221hg19UCSC Ensembl
Outerchr12:40006713..40007415hg19UCSC Ensembl
Innerchr12:38293177..38293488hg18UCSC Ensembl
Outerchr12:38292980..38293682hg18UCSC Ensembl
Cytoband12q12
Allele length
AssemblyAllele length
hg38703
hg19703
hg18703
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2007616
Supporting Variants
SamplesNA18507
Known GenesABCD2
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4521785
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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