A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4517439



Internal ID6756385
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:141414084..141414388hg38UCSC Ensembl
Outerchr7:141413877..141414599hg38UCSC Ensembl
Innerchr7:141113884..141114188hg19UCSC Ensembl
Outerchr7:141113677..141114399hg19UCSC Ensembl
Innerchr7:140760353..140760657hg18UCSC Ensembl
Outerchr7:140760146..140760868hg18UCSC Ensembl
Cytoband7q34
Allele length
AssemblyAllele length
hg38723
hg19723
hg18723
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv2264887
Supporting Variants
SamplesNA18507
Known GenesTMEM178B
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4517439
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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