Variant Details

Variant: essv4511874

Internal ID

6750820

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr21:46237429..46238759	hg38	UCSC Ensembl
Outer	chr21:46237243..46238937	hg38	UCSC Ensembl
Inner	chr21:47657343..47658673	hg19	UCSC Ensembl
Outer	chr21:47657157..47658851	hg19	UCSC Ensembl
Inner	chr21:46481771..46483101	hg18	UCSC Ensembl
Outer	chr21:46481585..46483279	hg18	UCSC Ensembl

Cytoband

21q22.3

Allele length

Assembly	Allele length
hg38	1695
hg19	1695
hg18	1695

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2393806

Supporting Variants

Samples

NA18507

Known Genes

MCM3AP, MCM3AP-AS1

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4511874

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a