Variant Details

Variant: essv4509343

Internal ID

6748289

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr10:76495824..76501259	hg38	UCSC Ensembl
Outer	chr10:76495633..76501459	hg38	UCSC Ensembl
Inner	chr10:78255582..78261017	hg19	UCSC Ensembl
Outer	chr10:78255391..78261217	hg19	UCSC Ensembl
Inner	chr10:77925588..77931023	hg18	UCSC Ensembl
Outer	chr10:77925397..77931223	hg18	UCSC Ensembl

Cytoband

10q22.3

Allele length

Assembly	Allele length
hg38	5827
hg19	5827
hg18	5827

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2397407

Supporting Variants

Samples

NA18507

Known Genes

C10orf11

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4509343

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a