A curated catalogue of human genomic structural variation




Variant Details

Variant: essv4509040



Internal ID6747986
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:287622..289895hg38UCSC Ensembl
Outerchr3:287542..289938hg38UCSC Ensembl
Innerchr3:329305..331578hg19UCSC Ensembl
Outerchr3:329225..331621hg19UCSC Ensembl
Innerchr3:304305..306578hg18UCSC Ensembl
Outerchr3:304225..306621hg18UCSC Ensembl
Cytoband3p26.3
Allele length
AssemblyAllele length
hg382397
hg192397
hg182397
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv1945808
Supporting Variants
SamplesNA18507
Known GenesCHL1
MethodSequencing
AnalysisHierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.
PlatformNot specified
Comments
ReferenceBentley_et_al_2008
Pubmed ID18987734
Accession Number(s)essv4509040
Frequency
Sample Size1
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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