Variant Details

Variant: essv4506674

Internal ID

7092306

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr7:90392815..90393137	hg38	UCSC Ensembl
Outer	chr7:90392635..90393312	hg38	UCSC Ensembl
Inner	chr7:90022129..90022451	hg19	UCSC Ensembl
Outer	chr7:90021949..90022626	hg19	UCSC Ensembl
Inner	chr7:89860065..89860387	hg18	UCSC Ensembl
Outer	chr7:89859885..89860562	hg18	UCSC Ensembl

Cytoband

7q21.13

Allele length

Assembly	Allele length
hg38	678
hg19	678
hg18	678

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

esv2068010

Supporting Variants

Samples

NA18507

Known Genes

Method

Sequencing

Analysis

Hierarchical clustering of anomalous readpairs was used to identify groupings of five or more readpairs that had a similar size and position. Read pairs were defined as anomalous if they had high-confidence alignments of each individual read that nevertheless were either incorrectly oriented or implied an insert size of at least 3 standard deviations outside the sample median.

Platform

Not specified

Comments

Reference

Bentley_et_al_2008

Pubmed ID

18987734

Accession Number(s)

essv4506674

Frequency

Sample Size	1
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a