A curated catalogue of human genomic structural variation




Variant Details

Variant: essv44360



Internal ID11338457
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:28530279..28665641hg38UCSC Ensembl
Innerchr15:28775425..28910787hg19UCSC Ensembl
Innerchr15:26574466..26709828hg18UCSC Ensembl
Cytoband15q13.1
Allele length
AssemblyAllele length
hg38135363
hg19135363
hg18135363
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv13880
Supporting Variants
SamplesNA12489
Known GenesGOLGA8F, GOLGA8G, HERC2P9
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv44360
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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