A curated catalogue of human genomic structural variation




Variant Details

Variant: essv43612



Internal ID11011663
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:181353085..181405095hg38UCSC Ensembl
Innerchr5:180780086..180832096hg19UCSC Ensembl
Innerchr5:180712692..180764702hg18UCSC Ensembl
Cytoband5q35.3
Allele length
AssemblyAllele length
hg3852011
hg1952011
hg1852011
Variant TypeCNV gain
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv21347
Supporting Variants
SamplesNA18909
Known GenesOR4F16, OR4F29, OR4F3
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv43612
Frequency
Sample Size40
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer