A curated catalogue of human genomic structural variation




Variant Details

Variant: essv42864



Internal ID11357600
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46372746..46792400hg38UCSC Ensembl
Innerchr10:46757198..47178021hg19UCSC Ensembl
Innerchr10:46177204..46598027hg18UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg38419655
hg19420824
hg18420824
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv12250
Supporting Variants
SamplesNA18909
Known GenesANXA8, BMS1P1, BMS1P5, FAM25C, FAM25G, FAM35BP, GLUD1P7, GPRIN2, HNRNPA1P33, LINC00842, LOC100996758, NPY4R, SYT15
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv42864
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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