A curated catalogue of human genomic structural variation




Variant Details

Variant: essv42300



Internal ID11347314
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
InnerchrX:3821906..3881248hg38UCSC Ensembl
InnerchrX:3739947..3799289hg19UCSC Ensembl
InnerchrX:3749947..3809289hg18UCSC Ensembl
CytobandXp22.33
Allele length
AssemblyAllele length
hg3859343
hg1959343
hg1859343
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsesv19904
Supporting Variants
SamplesNA18505
Known GenesLOC389906
MethodOligo aCGH
AnalysisSegment log2 ratios from each sample. This was done running the GADA algorithm (Pique-Regi et al., 2008) using the options "-M 10 -T 10 -a 2.5". Filter non-CNV segments using intensity thresholds. Merge remaining CNV "calls" within each sample. Adjacent calls of the same direction (gain or loss) are merged if both: the distance between calls is less than 10kb, and the distance between calls is less than 10% of the size of the largest of the two calls.
PlatformSanger H. Sapiens 42mCGH Array 5781_53 726K v1
Comments
ReferenceConrad_et_al_2009
Pubmed ID19812545
Accession Number(s)essv42300
Frequency
Sample Size40
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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