A curated catalogue of human genomic structural variation




Variant Details

Variant: essv16499973



Internal ID19363533
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:19642676..19642987hg38UCSC Ensembl
chr9:19642674..19642985hg19UCSC Ensembl
Cytoband9p22.1
Allele length
AssemblyAllele length
hg38312
hg19312
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3678632
Supporting Variants
Samples
Known GenesSLC24A2
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)essv16499973
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer