A curated catalogue of human genomic structural variation




Variant Details

Variant: essv16499585



Internal ID19363145
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:157035368..157035474hg38UCSC Ensembl
chr1:157005160..157005266hg19UCSC Ensembl
Cytoband1q23.1
Allele length
AssemblyAllele length
hg38107
hg19107
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3678201
Supporting Variants
Samples
Known GenesARHGEF11
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)essv16499585
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer