A curated catalogue of human genomic structural variation




Variant Details

Variant: essv16497604



Internal ID19361164
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:3371453..3371509hg38UCSC Ensembl
chr1:3288017..3288073hg19UCSC Ensembl
Cytoband1p36.32
Allele length
AssemblyAllele length
hg3857
hg1957
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3676001
Supporting Variants
Samples
Known GenesPRDM16
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)essv16497604
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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