A curated catalogue of human genomic structural variation




Variant Details

Variant: essv16495159



Internal ID19012033
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:54177178..54177240hg38UCSC Ensembl
chr1:54642851..54642913hg19UCSC Ensembl
Cytoband1p32.3
Allele length
AssemblyAllele length
hg3863
hg1963
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3673283
Supporting Variants
Samples
Known GenesCYB5RL
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)essv16495159
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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