A curated catalogue of human genomic structural variation




Variant Details

Variant: essv16489698



Internal ID19353258
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:137059138..137059138hg38UCSC Ensembl
chr5:136394827..136394827hg19UCSC Ensembl
Cytoband5q31.2
Allele length
AssemblyAllele length
hg38235
hg19235
Variant TypeCNV novel sequence insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3667215
Supporting Variants
Samples
Known GenesSPOCK1
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)essv16489698
Frequency
Sample Size20
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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