A curated catalogue of human genomic structural variation




Variant Details

Variant: essv16468066



Internal ID19331626
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:111103323..111103382hg38UCSC Ensembl
chr3:110822170..110822229hg19UCSC Ensembl
Cytoband3q13.13
Allele length
AssemblyAllele length
hg3860
hg1960
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3683321
Supporting Variants
Samples
Known GenesPVRL3
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)essv16468066
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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