A curated catalogue of human genomic structural variation




Variant Details

Variant: essv16464313



Internal ID19327873
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr17:50350142..50350527hg38UCSC Ensembl
chr17:48427503..48427888hg19UCSC Ensembl
Cytoband17q21.33
Allele length
AssemblyAllele length
hg38386
hg19386
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsesv3649131
Supporting Variants
Samples
Known GenesXYLT2
MethodSequencing
Analysisde novo assemblies produced from SoapDenovo2 were aligned to GRC37 using LAST and input into SoapAsmVar for population-wide structural variation detection. The method is described in the publication
PlatformIllumina HiSeq 2000
Comments
ReferenceBesenbacher_et_al_2015
Pubmed ID25597990
Accession Number(s)essv16464313
Frequency
Sample Size20
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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